fidoptTotalSegmentator MRI, 50 structures
Axial T1-weighted gradient-echo MR of one adult's upper abdomen (fat, fat-suppressed, in phase or opposed phase), with the TotalSegmentator MRI dataset's masks of the structures it holds (University Hospital Basel).
Read before comparing (3)
- Cases. The fixed images of TotalSegMRI's pairs: a test pair's image is a test case, a development pair's a development case. The moving images are left out.
- Outside models. TotalSegmentator's own MR models were trained on this dataset, so their line on it is not a fair comparison.
- Values. As delivered: 16-bit integers with no common scale (maxima 311 to 1265 on the test pairs). No mask is given.
| Accuracy | Cost | |||||||
|---|---|---|---|---|---|---|---|---|
| # | Method | Dice | Surface Dice | HD95 mm | Time s | RAM GB | GPU GB | Images |
| 1 | KonfAI segmentation app · MRSegmentator, KonfAI appGPUapp37 of 42 structures | 0.183 ±0.239 | 0.105 ±0.148 | 119.47 ±41.36 | 2.7 | 8.6 | ||
| 2 | KonfAI segmentation app · IMPACTSeg body, KonfAI appGPUapp1 of 42 structures | 0.011 ±0.019 | 0.000 ±0.001 | 117.89 ±179.31 | 1.7 | 3.3 | ||
The order averages each method's ranks on Dice, Surface Dice, HD95 mm, so the first one is not always the best in every column. ± is the 95% interval of the mean over the 10 cases. Two neighbours are tied when a paired Wilcoxon test on the shared cases does not find the upper one better on Dice (5%): the places a method could hold are then shown under its own. The best value of each column is in colour. Click a row to see its images, a column title to sort by it. Time and memory measured on Laptop.
Dice: how much the organ contours overlap, 1 is perfect. Surface Dice: the share of the contours' surfaces within a tolerance of each other, 1 is perfect. HD95: distance between the contours' surfaces.
Case by case
Click a score to look at that result: the image, the truth in green and the method's map in red. Underlined scores have their image; for the others you see the case without the result.
About the data
- Truth
- contours by a program, verified by people the dataset's masks of the 50 structures of TotalSegmentator's task total_mr on each image, merged into one map (a voxel two masks claim goes to the smaller structure); the two images of a test pair hold 22 to 26 of them in common
- Source
- zenodo.org/records/22688334
zenodo.org/records/14710732
arxiv.org/abs/2405.19492
doi.org/10.1148/radiol.241613
github.com/wasserth/TotalSegmentator - Licence
- CC BY 4.0
9 cases for tuning, never tested
s0181_s0222/fixed, s0252_s0171/fixed, s0201_s0241/fixed, s0242_s0158/fixed, s0166_s0159/fixed, s0254_s0197/fixed, s0293_s0199/fixed, s0155_s0207/fixed, s0289_s0270/fixed